Package: GeneralizedUmatrix 1.2.6
GeneralizedUmatrix: Credible Visualization for Two-Dimensional Projections of Data
Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018] <doi:10.1007/978-3-658-20540-9>. This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is derived from the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <doi:10.1007/978-3-658-20540-9> and the main algorithm called simplified self-organizing map for dimensionality reduction methods is published in <doi:10.1016/j.mex.2020.101093>.
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GeneralizedUmatrix.pdf |GeneralizedUmatrix.html✨
GeneralizedUmatrix/json (API)
# Install 'GeneralizedUmatrix' in R: |
install.packages('GeneralizedUmatrix', repos = c('https://mthrun.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mthrun/generalizedumatrix/issues
- Chainlink - Chainlink is part of the Fundamental Clustering Problem Suit (FCPS) [Thrun/Ultsch, 2020].
- DefaultColorSequence - Default color sequence for plots
- UmatrixColormap - U-Matrix colors
Last updated 1 years agofrom:6bb9b43fe1. Checks:OK: 1 NOTE: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 08 2024 |
R-4.5-win-x86_64 | NOTE | Oct 08 2024 |
R-4.5-linux-x86_64 | NOTE | Oct 08 2024 |
R-4.4-win-x86_64 | NOTE | Oct 08 2024 |
R-4.4-mac-x86_64 | NOTE | Oct 08 2024 |
R-4.4-mac-aarch64 | NOTE | Oct 08 2024 |
R-4.3-win-x86_64 | NOTE | Oct 08 2024 |
R-4.3-mac-x86_64 | NOTE | Oct 08 2024 |
R-4.3-mac-aarch64 | NOTE | Oct 08 2024 |
Exports:CalcUstarmatrixEsomNeuronsAsListExtendToroidalUmatrixGeneralizedUmatrixGeneratePmatrixListAsEsomNeuronsLowLandNormalizeUmatrixplotTopographicMapReduceToLowLandTopviewTopographicMapUheights4DataUniqueBestMatchingUnitsupscaleUmatrixXYcoords2LinesColumns
Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppArmadilloRcppParallelrlangscalestibbleutf8vctrsviridisLitewithr